Keto Rhubarb Muffins with Greek Yogurt – A Sweet Low-Carb Fix

There’s something about baking muffins that just slows life down for a second. You throw a bunch of things into a bowl, mix it up, and in less than 30 minutes, your kitchen smells like heaven. But if you’re trying to cut carbs, it’s easy to think muffins are off-limits. Nope. Not today. These keto rhubarb muffins with Greek yogurt hit that sweet spot between healthy and actually enjoyable to eat.

They’re soft, slightly tart, naturally sweetened, and made with simple ingredients. No need for fancy stuff. No weird aftertaste either. Just clean, basic, and low-carb.

What Makes These Muffins Different?

So, rhubarb doesn’t get enough love. It’s got that bold, punchy flavor that gives baked goods a nice little kick. You usually see it paired with strawberries in pies, but it deserves to shine on its own sometimes. And in these rhubarb yogurt muffins, it really does.

The Greek yogurt makes them moist without any added oil, and almond flour keeps them low in carbs. These are muffins you can actually eat for breakfast or snack without feeling like you messed up your whole day.

Ingredients You’ll Need

You won’t need anything fancy. Just the basics. Here’s the list:

  • 1 cup chopped rhubarb (fresh is best, but frozen works too)

  • 2 cups almond flour

  • 2 eggs

  • 1/2 cup plain Greek yogurt (full-fat works great)

  • 1/3 cup erythritol or monk fruit sweetener

  • 1 tsp vanilla extract

  • 1 tsp baking powder

  • 1/2 tsp baking soda

  • Pinch of salt

  • Optional: 1/2 tsp cinnamon or nutmeg if you like a warmer flavor

Why Use Greek Yogurt?

If you’re looking up recipes with Greek yogurt, chances are you’ve seen it used in muffins, pancakes, and even cakes. But here’s why it works especially well in rhubarb muffin recipes: It brings in moisture without turning the muffin into a soggy mess. Plus, it adds a little protein and tang that balances out the tartness of the rhubarb.

These rhubarb Greek yogurt muffins don’t need oil or butter. The yogurt does all the heavy lifting. So you get a healthy rhubarb dessert that’s also kind to your macros.

Step-by-Step Instructions

Let’s keep this easy. One bowl. One spoon. Muffins in the oven in 10 minutes.

1. Prep the Rhubarb

Wash and chop your rhubarb into small chunks—nothing bigger than a blueberry. If you’re using frozen rhubarb, thaw it first and pat it dry. You don’t want too much water in the mix.

2. Mix the Dry Stuff

In a bowl, mix almond flour, baking powder, baking soda, salt, and sweetener. You can also toss in cinnamon here if you’re using it. Just mix it lightly with a fork or spoon.

3. Add Wet Ingredients

Now add the eggs, Greek yogurt, and vanilla. Mix until it forms a smooth batter. It might be a little thicker than regular muffin batter. That’s fine.

4. Fold in Rhubarb

Gently stir in the rhubarb. Make sure it’s spread out evenly but don’t overmix it. You want little pockets of tartness in each bite.

5. Spoon into Muffin Liners

Line a muffin tray with paper liners and fill each about ¾ full. These won’t rise a ton like bakery muffins, so don’t be shy.

6. Bake

Pop them in a preheated oven at 350°F (175°C) and bake for 20–25 minutes. They’re done when the tops are golden and a toothpick comes out clean.

7. Cool Down (If You Can Wait)

Let them cool for a few minutes in the pan, then move them to a wire rack. The longer they cool, the firmer they get—but honestly, they’re amazing warm.

Rhubarb Muffins Healthy Enough for Breakfast

The thing with most muffins is, they’re basically cupcakes pretending to be breakfast. These aren’t. These are straight-up breakfast material. Full of fiber from almond flour, protein from Greek yogurt, and a gentle sweetness from natural keto sweeteners, they’re filling without making you crash an hour later.

If you’ve been hunting for rhubarb muffins healthy enough for a weekday grab-and-go or post-workout bite, this is it.

Healthy Rhubarb Recipes Are Rare—This One’s Worth Keeping

Most healthy rhubarb recipes still rely on white flour or heaps of sugar. This one doesn’t. No gluten, no added sugar, and no junk. Just good stuff.

It also doesn’t try to be something it’s not. It’s not a dense brick. It’s not overly eggy like some keto bakes. It’s just a muffin. A really good one.

How to Store Them

Make a batch on Sunday and they’ll last all week if you hide them well enough. Store in an airtight container in the fridge for 5–6 days. You can also freeze them and pop one in the microwave when you want it. They’re just as good the second time around.

Tips to Get the Best Muffins Every Time

1. Use Fresh Rhubarb If You Can

It’s crisper and holds its shape better. But frozen is fine, just dry it well.

2. Don’t Overmix

This is baking 101. Mix till just combined. No one wants a chewy muffin.

3. Let Them Rest

Give them 10 minutes after baking before biting in. That gives the crumb a chance to set.

Add-Ins If You Wanna Switch It Up

These rhubarb yogurt muffins are solid as-is, but if you want to mix things up:

  • Chopped walnuts or pecans for crunch

  • Lemon zest to brighten the flavor

  • Shredded coconut for a tropical feel

  • Dark chocolate chips (keto-friendly) if you like the tart + sweet mix

 My First Attempt in making this Keto Rhubarb Muffins with Greek Yogurt

Not gonna lie, my first batch wasn’t great. I used too much rhubarb and didn’t dry it. Muffins were wet and weird. But once I got the hang of it—drying the rhubarb, balancing the yogurt and flour—it became a no-brainer. Now I make these almost every other week.

They’ve even passed the “kid test” in my house, and that’s saying something.

More Than Just Muffins – Use It as a Base

This isn’t just one of those rhubarb muffin recipes you make once and forget. You can tweak it in so many ways:

  • Turn it into a loaf: Just pour the batter into a loaf tin and bake longer.

  • Make mini muffins: Same batter, shorter bake time—perfect for snacks.

  • Try it as a coffee cake base: Just double the batter and pour into a square pan.

Once you get the feel of it, this recipe becomes your go-to. It’s part of my “healthy rhubarb desserts” rotation now, especially in spring when rhubarb’s everywhere and cheap.

Conclusion

If you’re after rhubarb muffins healthy enough to eat regularly but tasty enough to crave, this one hits the mark. Low-carb, gluten-free, and built on simple ingredients like almond flour and Greek yogurt—it checks all the boxes. No fluff, no weird ingredients.

Great for anyone keeping things keto, low sugar, or just trying to eat smarter.

So next time you spot rhubarb at the store, don’t walk past it. Pick it up, grab some Greek yogurt, and whip up a batch of these muffins. They’re quick, forgiving, and actually worth baking again and again.

Print

Keto Rhubarb Muffins with Greek Yogurt recipe

Soft, low-carb rhubarb muffins made with Greek yogurt and almond flour. Perfect for healthy rhubarb desserts, quick keto breakfast, or easy summer meals. These muffins are full of flavor and have no added sugar or flour.

  • Author: Jane Summerfield
  • Prep Time: 10 minutes
  • Cook Time: 25 minutes
  • Total Time: 35 minutes
  • Yield: 1012 muffins 1x
  • Category: Dessert, Breakfast
  • Method: Baking
  • Cuisine: American, Keto, Low-Carb
  • Diet: Gluten Free

Ingredients

Scale
  • 1 cup chopped rhubarb (fresh or frozen, thawed and dried)

  • 2 cups almond flour

  • 2 large eggs

  • 1/2 cup plain full-fat Greek yogurt

  • 1/3 cup erythritol or monk fruit sweetener

  • 1 tsp vanilla extract

  • 1 tsp baking powder

  • 1/2 tsp baking soda

  • Pinch of salt

  • (Optional) 1/2 tsp ground cinnamon or nutmeg

Instructions

  1. Preheat oven to 350°F (175°C). Line a muffin tray with paper liners.

  2. In a large bowl, mix almond flour, baking powder, baking soda, sweetener, salt, and cinnamon (if using).

  3. Add eggs, Greek yogurt, and vanilla extract. Mix until batter is smooth.

  4. Gently fold in chopped rhubarb.

  5. Spoon batter evenly into muffin liners, filling each about ¾ full.

  6. Bake for 20–25 minutes or until a toothpick comes out clean.

  7. Cool in pan for 5 minutes, then move to a rack. Eat warm or chilled.

Notes

  • Use fresh rhubarb if possible for better texture.

  • Muffins store well in fridge for up to 5 days.

  • Freeze in a zip bag for up to 2 months. Reheat in microwave or toaster oven.

  • These aren’t very sweet—adjust sweetener if you like it sweeter.

Nutrition

  • Serving Size: 1 muffin
  • Calories: 160 Sugar: 1g Sodium: 110mg Fat: 13g Saturated Fat: 2g Unsaturated Fat: 10g Trans Fat: 0g Carbohydrates: 6g Fiber: 3g Protein: 6g Cholesterol: 45mg

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